PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_39691_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 227aa    MW: 24625.2 Da    PI: 7.0291
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_39691_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.17.2e-145176227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    +++ Cr+f+ tGtCkyG+ CkF+H++
  Neem_39691_f_1 51 DQPDCRYFMNTGTCKYGADCKFHHPK 76
                    6899********************96 PP

2zf-CCCH18.14.8e-0696114119
                     --S---SGGGGTS--TTTT CS
         zf-CCCH   1 yktelCrffartGtCkyGd 19 
                     +++++C++++ +G+Ck+G+
  Neem_39691_f_1  96 PGQAICSNYSMYGICKFGP 114
                     5789**************5 PP

3zf-CCCH31.82.4e-10114135526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++++ +G+Ck+G++C+F H+
  Neem_39691_f_1 114 PCSNYSMYGICKFGPTCRFDHP 135
                     7********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-64976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.5494977IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-115176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-75378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-65576IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.80395113IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4111136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-5112137IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-7114135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.361114137IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
METEGNIGPV SPSSIAGSNL IYSSRNPSDL STGGQVHMLA TSSPNLPERP DQPDCRYFMN  60
TGTCKYGADC KFHHPKERIA QSAASNVGPL GLPSRPGQAI CSNYSMYGIC KFGPCSNYSM  120
YGICKFGPTC RFDHPYAGYP FNYGLSLPPL SILDSPLMTH QAVPTTHSSD RSPIMSSKIP  180
NWVQNSDAES MKHQNTTTKN SDNSSEVDHS PTQSVQNSSD HSHNQSN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447662.11e-111hypothetical protein CICLE_v10015215mg
RefseqXP_006469597.11e-111PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLA0A067EWN21e-113A0A067EWN2_CITSI; Uncharacterized protein
STRINGPOPTR_0014s15770.15e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.23e-29C3H family protein